Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5519

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13886 and 13887 are separated by 666 nucleotides13887 and 13888 are separated by 464 nucleotides mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287,492 to 288,002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288,669 to 289,832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290,297 to 291,417 13888

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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288,039 + +2.9
288,175 - -0.3
288,198 - +2.5
288,211 + -0.9
288,263 + -0.0
288,402 - +0.0
288,497 + +0.1
288,636 - -0.0
288,900 - 13887 mRNA_5519 0.20 +1.3
288,902 - 13887 mRNA_5519 0.20 +1.0
288,936 - 13887 mRNA_5519 0.23 -0.3
289,099 - 13887 mRNA_5519 0.37 +0.5
289,108 - 13887 mRNA_5519 0.38 +0.3
289,251 + 13887 mRNA_5519 0.50 -0.7
289,539 - 13887 mRNA_5519 0.75 -0.4
289,801 - +0.8
289,816 - +0.3
289,953 - +1.1
290,007 - -0.8
290,092 - -1.3
290,102 + +1.0
290,103 - +0.1
290,275 - -2.2
290,661 - 13888 mRNA_5520 0.32 +0.7
290,661 - 13888 mRNA_5520 0.32 -0.5
290,667 + 13888 mRNA_5520 0.33 -4.0
290,673 - 13888 mRNA_5520 0.34 +0.8
290,687 + 13888 mRNA_5520 0.35 -1.1
290,687 - 13888 mRNA_5520 0.35 -1.8
290,713 + 13888 mRNA_5520 0.37 +0.8
290,744 + 13888 mRNA_5520 0.40 +0.8
290,799 - 13888 mRNA_5520 0.45 -0.5

Or see this region's nucleotide sequence