Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5531

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13898 and 13899 are separated by 635 nucleotides13899 and 13900 are separated by 36 nucleotides mRNA_5530: 13898 - K02949 RP-S11e, RPS11 small subunit ribosomal protein S11e, at 309,658 to 310,320 13898 mRNA_5531: 13899 - K03800 lplA, lplJ lipoate---protein ligase, at 310,956 to 312,571 13899 mRNA_5532: 13900 - K01519 ITPA inosine triphosphate pyrophosphatase, at 312,608 to 313,852 13900

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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310,821 + -0.5
310,826 + +0.6
310,954 - +2.5
312,615 + +0.5
312,779 + 13900 mRNA_5532 0.14 -0.2
312,914 - 13900 mRNA_5532 0.25 -0.0
313,061 + 13900 mRNA_5532 0.36 -1.5
313,348 + 13900 mRNA_5532 0.59 +0.2

Or see this region's nucleotide sequence