Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5550

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13918 and 13919 are separated by 343 nucleotides mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353,365 to 355,997 13918 mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356,341 to 358,990 13919

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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352,410 + +1.2
352,428 + -1.9
352,566 + -0.6
352,749 + +1.8
352,864 + -1.9
352,922 - +1.8
352,950 + +0.0
352,987 - +0.9
353,880 - 13918 mRNA_5550 0.20 +1.0
356,186 + +0.1
356,263 - +0.7
356,278 - +0.1
356,638 + 13919 mRNA_5551 0.11 +2.6
356,649 - 13919 mRNA_5551 0.12 +0.1
356,914 + 13919 mRNA_5551 0.22 -0.4

Or see this region's nucleotide sequence