Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5560

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13927 and 13928 are separated by 80 nucleotides13928 and 13929 are separated by 689 nucleotides mRNA_5559: 13927 - KOG2406 MADS box transcription factor, at 377,772 to 380,881 13927 mRNA_5560: 13928 - BLAST PROTEIN D2013.6 [Ceraceosorus bombacis], at 380,962 to 381,944 13928 mRNA_5561: 13929 - Hypothetical Protein, at 382,634 to 383,572 13929

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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380,895 + -0.5
380,903 - +0.7
380,906 + -1.1
380,920 - -0.3
381,183 - 13928 mRNA_5560 0.22 +0.6
381,633 - 13928 mRNA_5560 0.68 -2.2
381,927 + -0.9
382,093 - -2.5
382,263 + +0.2
382,330 + -0.1
382,902 - 13929 mRNA_5561 0.29 -3.2

Or see this region's nucleotide sequence