Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5576

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13943 and 13944 are separated by 381 nucleotides13944 and 13945 are separated by 616 nucleotides mRNA_5575: 13943 - K12873 BUD31, G10 bud site selection protein 31, at 414,313 to 415,303 13943 mRNA_5576: 13944 - Interpro GDP-fucose protein O-fucosyltransferase, at 415,685 to 417,537 13944 mRNA_5577: 13945 - Hypothetical Protein, at 418,154 to 419,235 13945

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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415,201 + 13943 mRNA_5575 0.90 -1.3
415,459 + +0.9
415,470 + +0.6
415,495 - -0.4
415,510 - -0.9
415,634 - +1.1
415,648 - +0.8
415,649 + +0.1
415,664 + +0.2
415,956 - 13944 mRNA_5576 0.15 +0.2
415,960 + 13944 mRNA_5576 0.15 +1.1
416,079 - 13944 mRNA_5576 0.21 +0.6
416,219 - 13944 mRNA_5576 0.29 -0.3
416,253 + 13944 mRNA_5576 0.31 -1.2
416,477 + 13944 mRNA_5576 0.43 +0.3
416,814 + 13944 mRNA_5576 0.61 -1.1
416,938 - 13944 mRNA_5576 0.68 -2.2
416,955 - 13944 mRNA_5576 0.69 -0.7
417,566 - +0.3
417,972 - +0.1
418,407 - 13945 mRNA_5577 0.23 -0.4

Or see this region's nucleotide sequence