Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5591

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13959 and 13960 are separated by 255 nucleotides mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458,129 to 461,343 13959 mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461,599 to 463,064 13960

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
457,260 + -0.7
457,327 + -1.0
457,332 + -1.2
457,442 - +0.2
457,454 - +0.6
457,465 + +0.6
457,468 + -0.9
457,596 + +0.3
457,642 + +0.6
457,706 + +1.1
457,757 - +2.7
457,909 - +0.3
457,998 - +0.5
458,023 + -1.5
458,024 - +0.1
458,051 - +2.0
458,055 - +0.3
458,058 + +2.1
459,071 - 13959 mRNA_5591 0.29 +0.4
459,203 + 13959 mRNA_5591 0.33 +0.6
459,203 + 13959 mRNA_5591 0.33 +0.3
459,226 + 13959 mRNA_5591 0.34 -3.4
459,335 - 13959 mRNA_5591 0.38 +0.4
459,384 + 13959 mRNA_5591 0.39 -1.8
459,390 - 13959 mRNA_5591 0.39 -1.5
459,777 - 13959 mRNA_5591 0.51 +0.7
459,795 + 13959 mRNA_5591 0.52 +1.1
460,080 - 13959 mRNA_5591 0.61 -0.1
460,085 + 13959 mRNA_5591 0.61 +0.9
460,492 - 13959 mRNA_5591 0.73 -0.0
460,521 - 13959 mRNA_5591 0.74 +1.1
460,954 - 13959 mRNA_5591 0.88 +1.3
461,214 - -0.2
461,232 - +0.1
461,497 + -1.3
461,497 + -1.6
461,562 - -0.2
461,686 - -0.6
461,697 - -1.8
461,953 - 13960 mRNA_5592 0.24 -1.4
462,286 - 13960 mRNA_5592 0.47 -0.2
462,330 + 13960 mRNA_5592 0.50 -2.1

Or see this region's nucleotide sequence