Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5598

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13965 and 13966 are separated by 505 nucleotides13966 and 13967 are separated by 132 nucleotides mRNA_5597: 13965 - Hypothetical Protein, at 472,641 to 473,822 13965 mRNA_5598: 13966 - KOG0118 FOG RRM domain, at 474,328 to 475,458 13966 mRNA_5599: 13967 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 475,591 to 478,385 13967

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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473,450 - 13965 mRNA_5597 0.68 -1.1
474,411 - +0.1
475,750 + +0.7
475,751 + -1.5
475,752 + -1.7
475,761 + -0.4
475,766 - +1.0
475,771 + -2.2
475,777 + +1.2
475,921 + 13967 mRNA_5599 0.12 +0.6
475,922 - 13967 mRNA_5599 0.12 -2.7
475,932 - 13967 mRNA_5599 0.12 -1.0
475,933 - 13967 mRNA_5599 0.12 +1.2
475,947 + 13967 mRNA_5599 0.13 +1.0
475,950 + 13967 mRNA_5599 0.13 +0.5
475,954 + 13967 mRNA_5599 0.13 -0.4
475,984 - 13967 mRNA_5599 0.14 +1.5
476,074 - 13967 mRNA_5599 0.17 -2.0
476,078 - 13967 mRNA_5599 0.17 +0.4
476,088 - 13967 mRNA_5599 0.18 -2.0
476,093 - 13967 mRNA_5599 0.18 +0.0
476,100 + 13967 mRNA_5599 0.18 -1.7
476,100 + 13967 mRNA_5599 0.18 -0.5
476,104 - 13967 mRNA_5599 0.18 +0.0
476,105 - 13967 mRNA_5599 0.18 -0.4
476,105 + 13967 mRNA_5599 0.18 -0.8
476,122 + 13967 mRNA_5599 0.19 +0.7
476,141 - 13967 mRNA_5599 0.20 -0.4
476,142 - 13967 mRNA_5599 0.20 -0.7
476,152 - 13967 mRNA_5599 0.20 -0.5
476,177 + 13967 mRNA_5599 0.21 -1.6
476,199 + 13967 mRNA_5599 0.22 -0.6
476,290 + 13967 mRNA_5599 0.25 -0.5
476,296 - 13967 mRNA_5599 0.25 +0.7
476,326 + 13967 mRNA_5599 0.26 +0.0
476,326 + 13967 mRNA_5599 0.26 +0.4
476,339 - 13967 mRNA_5599 0.27 -1.4
476,352 - 13967 mRNA_5599 0.27 +0.6
476,363 - 13967 mRNA_5599 0.28 +0.3
476,364 - 13967 mRNA_5599 0.28 +1.1
476,364 - 13967 mRNA_5599 0.28 -0.5
476,365 + 13967 mRNA_5599 0.28 +1.0
476,368 - 13967 mRNA_5599 0.28 -0.2
476,377 + 13967 mRNA_5599 0.28 +1.9
476,378 + 13967 mRNA_5599 0.28 +1.1
476,379 - 13967 mRNA_5599 0.28 +0.8
476,382 - 13967 mRNA_5599 0.28 +0.5
476,393 - 13967 mRNA_5599 0.29 +0.4
476,401 - 13967 mRNA_5599 0.29 +1.8
476,410 + 13967 mRNA_5599 0.29 +0.4
476,410 - 13967 mRNA_5599 0.29 +1.3
476,411 + 13967 mRNA_5599 0.29 -0.2
476,429 + 13967 mRNA_5599 0.30 +0.2
476,437 - 13967 mRNA_5599 0.30 +0.3
476,442 - 13967 mRNA_5599 0.30 -1.2
476,444 - 13967 mRNA_5599 0.31 +0.4
476,446 - 13967 mRNA_5599 0.31 +0.6
476,448 + 13967 mRNA_5599 0.31 -1.0
476,449 + 13967 mRNA_5599 0.31 +0.6
476,453 + 13967 mRNA_5599 0.31 +0.4

Or see this region's nucleotide sequence