Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5616

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13983 and 13984 are separated by 550 nucleotides13984 and 13985 are separated by 383 nucleotides mRNA_5615: 13983 - HMMPfam-GRF zinc finger-PF06839, at 519,944 to 520,866 13983 mRNA_5616: 13984 - HMMPfam-GRF zinc finger-PF06839, at 521,417 to 522,202 13984 mRNA_5617: 13985 - BLAST beta-flanking protein [Kwoniella dejecticola CBS ..., at 522,586 to 523,883 13985

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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520,442 - 13983 mRNA_5615 0.54 -0.1
521,414 - -0.4
521,634 - 13984 mRNA_5616 0.28 -0.6
521,982 - 13984 mRNA_5616 0.72 -0.7
522,386 + -0.2
522,389 - -0.1
522,523 - -2.4
522,529 - +0.5
522,844 - 13985 mRNA_5617 0.20 -0.4
522,846 - 13985 mRNA_5617 0.20 +0.2
522,860 - 13985 mRNA_5617 0.21 -1.8
523,003 + 13985 mRNA_5617 0.32 +0.5

Or see this region's nucleotide sequence