Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5639

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14006 and 14007 are separated by 217 nucleotides14007 and 14008 are separated by 769 nucleotides mRNA_5638: 14006 - Hypothetical Protein, at 570,923 to 572,239 14006 mRNA_5639: 14007 - SUPERFAMILY--SSF52047, at 572,457 to 573,872 14007 mRNA_5640: 14008 - BLAST putative acyl- dehydrogenase [Moniliophthora rore..., at 574,642 to 575,900 14008

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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571,537 - 14006 mRNA_5638 0.47 -0.1
571,544 + 14006 mRNA_5638 0.47 -0.3
571,549 + 14006 mRNA_5638 0.48 +0.3
572,106 - 14006 mRNA_5638 0.90 +1.3
572,267 + -0.0
572,396 - -0.1
572,567 - +0.1
572,701 - 14007 mRNA_5639 0.17 -0.1
572,730 + 14007 mRNA_5639 0.19 -0.4
572,942 - 14007 mRNA_5639 0.34 +0.7
573,142 + 14007 mRNA_5639 0.48 +1.2
573,275 - 14007 mRNA_5639 0.58 +0.9
573,472 - 14007 mRNA_5639 0.72 +2.1
573,568 - 14007 mRNA_5639 0.78 +0.0
573,851 - +0.2
573,859 + -0.4
574,045 - +0.6
574,158 - -0.8
574,168 - -1.2
574,174 + +1.5
574,177 - -0.2
574,315 - -0.0
574,336 + +0.1
574,448 + +0.7
574,468 - -1.4
574,475 + -0.2
574,477 + -0.5
574,534 - -0.9
574,605 + +0.2
574,605 - -1.4
574,790 + 14008 mRNA_5640 0.12 +0.4

Or see this region's nucleotide sequence