Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5649

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14016 and 14017 are separated by 688 nucleotides14017 and 14018 are separated by 474 nucleotides mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592,841 to 594,405 14016 mRNA_5649: 14017 - SUPERFAMILY--SSF52047, at 595,094 to 596,616 14017 mRNA_5650: 14018 - Hypothetical Protein, at 597,091 to 598,437 14018

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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594,511 + +0.4
594,646 + +0.7
594,662 + +0.4
594,670 + +0.2
594,920 - -0.5
594,964 - -1.1
594,983 - +0.5
595,152 + -1.6
595,385 - 14017 mRNA_5649 0.19 -1.0
595,404 - 14017 mRNA_5649 0.20 +0.5
595,535 + 14017 mRNA_5649 0.29 +0.8
595,540 + 14017 mRNA_5649 0.29 +0.1
595,558 + 14017 mRNA_5649 0.30 +1.3
596,261 - 14017 mRNA_5649 0.77 +1.6
596,394 + 14017 mRNA_5649 0.85 -1.3
596,399 + 14017 mRNA_5649 0.86 -0.6
596,570 + +3.7
596,684 + -0.7
596,698 + -1.4
596,701 - -1.3
596,723 - +0.3
597,007 - -0.4
597,030 + -0.1
597,031 - +0.7
597,169 - -2.2
597,176 - +0.3
597,476 - 14018 mRNA_5650 0.29 -0.3
597,500 - 14018 mRNA_5650 0.30 -2.4
597,568 + 14018 mRNA_5650 0.35 +1.1

Or see this region's nucleotide sequence