Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5661

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14028 and 14029 are separated by 529 nucleotides14029 and 14030 are separated by 264 nucleotides mRNA_5660: 14028 - Hypothetical Protein, at 623,646 to 625,624 14028 mRNA_5661: 14029 - K15151 MED10, NUT2 mediator of RNA polymerase II transcription subunit 10, at 626,154 to 626,959 14029 mRNA_5662: 14030 - Hypothetical Protein, at 627,224 to 629,083 14030

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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625,550 - +0.3
625,581 - +0.4
625,694 - -0.2
625,710 + -0.7
625,990 + +1.0
627,615 + 14030 mRNA_5662 0.21 +0.9
627,765 + 14030 mRNA_5662 0.29 +2.3
627,770 - 14030 mRNA_5662 0.29 -0.0
627,772 + 14030 mRNA_5662 0.29 +0.5

Or see this region's nucleotide sequence