Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5669

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14036 and 14037 are separated by 360 nucleotides14037 and 14038 are separated by 396 nucleotides mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648,393 to 650,754 14036 mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651,115 to 652,658 14037 mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653,055 to 658,546 14038

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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650,215 - 14036 mRNA_5668 0.77 -1.0
650,219 + 14036 mRNA_5668 0.77 +0.0
650,248 + 14036 mRNA_5668 0.79 +0.3
650,479 - 14036 mRNA_5668 0.88 +0.4
650,639 - +0.3
650,640 + +0.9
650,645 + +0.5
650,787 - -1.3
652,800 + -1.0
652,822 + -0.3
652,840 + +1.1
652,931 + -0.2
652,934 - -0.9
652,972 + -1.7
652,973 + +0.5
653,253 + +1.9

Or see this region's nucleotide sequence