Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5694

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14061 and 14062 are separated by 244 nucleotides14062 and 14063 are separated by 624 nucleotides mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704,894 to 706,050 14061 mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706,295 to 707,436 14062 mRNA_5695: 14063 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 708,061 to 710,208 14063

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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705,309 - 14061 mRNA_5693 0.36 -2.0
705,625 - 14061 mRNA_5693 0.63 -2.2
705,655 - 14061 mRNA_5693 0.66 -3.2
705,786 - 14061 mRNA_5693 0.77 -2.3
705,788 + 14061 mRNA_5693 0.77 -2.3
705,819 + 14061 mRNA_5693 0.80 -3.5
706,022 + +1.8
706,083 + +1.1
706,209 - +0.3
706,213 - +0.4
706,221 - -0.2
706,222 + -2.4
706,244 + +0.5
706,256 - +0.2
706,260 - -0.1
706,262 + +0.7
706,392 + -0.3
706,404 + +1.1
706,422 + 14062 mRNA_5694 0.11 +0.4
706,433 + 14062 mRNA_5694 0.12 -0.1
706,435 + 14062 mRNA_5694 0.12 -0.1
706,860 + 14062 mRNA_5694 0.49 -1.0
706,872 - 14062 mRNA_5694 0.51 +1.1
707,415 + +0.1
707,464 - +1.3
707,560 + +0.2
707,595 - -0.8
707,622 - +0.0
707,724 - -1.0
707,893 - -1.6
707,896 - -2.3
707,927 + -1.2
708,042 - -1.9
708,216 - -1.3
708,266 - -1.1
708,352 + 14063 mRNA_5695 0.14 -1.1

Or see this region's nucleotide sequence