Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5699

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14066 and 14067 are separated by 449 nucleotides14067 and 14068 are separated by 357 nucleotides mRNA_5698: 14066 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 714,233 to 715,636 14066 mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716,086 to 718,925 14067 mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719,283 to 720,938 14068

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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715,684 - +0.5
715,920 - -0.1
716,712 - 14067 mRNA_5699 0.22 +0.3
716,783 + 14067 mRNA_5699 0.25 +0.2
717,033 + 14067 mRNA_5699 0.33 -0.5
717,382 - 14067 mRNA_5699 0.46 +1.3
717,531 + 14067 mRNA_5699 0.51 -0.1
717,842 - 14067 mRNA_5699 0.62 -0.4
717,941 - 14067 mRNA_5699 0.65 +0.2
717,988 + 14067 mRNA_5699 0.67 -1.9
718,116 + 14067 mRNA_5699 0.71 +0.8
718,470 - 14067 mRNA_5699 0.84 -1.4
718,523 - 14067 mRNA_5699 0.86 +0.7
718,692 - -0.2
718,943 - +0.9
718,975 - +0.5
718,980 + +0.3
719,018 + -0.3
719,020 - +0.5
719,044 - -0.6
719,050 + -0.8
719,070 + -1.4
719,144 - +1.1
719,177 + +0.3
719,197 + -0.6
719,315 - -0.5
719,359 + +0.3
719,405 - -0.5
719,417 + +0.3
719,437 - +0.4
719,440 - -1.0
719,440 + -0.7
719,450 - 14068 mRNA_5700 0.10 -0.7
719,450 - 14068 mRNA_5700 0.10 -1.3
719,490 + 14068 mRNA_5700 0.12 +0.5
719,492 - 14068 mRNA_5700 0.13 -0.1
719,493 + 14068 mRNA_5700 0.13 -1.0
719,495 - 14068 mRNA_5700 0.13 +1.4
719,509 + 14068 mRNA_5700 0.14 +0.5
719,520 + 14068 mRNA_5700 0.14 +0.4
719,524 + 14068 mRNA_5700 0.15 -0.1
719,531 - 14068 mRNA_5700 0.15 -0.3
719,552 - 14068 mRNA_5700 0.16 -0.7
719,669 - 14068 mRNA_5700 0.23 -0.2
719,679 - 14068 mRNA_5700 0.24 +1.1

Or see this region's nucleotide sequence