Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5703

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14070 and 14071 are separated by 832 nucleotides mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721,912 to 723,848 14070 mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724,681 to 726,988 14071

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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723,872 - -0.7
724,175 - +0.1
724,196 + +1.4
724,307 - -1.5
724,316 - +0.1
724,325 - +0.3
724,329 - -1.2
724,339 + +1.7
724,352 + -0.1
724,370 + +1.9
724,447 + -1.7
724,455 - -0.6
724,479 + -0.6
724,588 + +0.3
724,629 - +1.0
724,634 - +1.6
724,635 + -0.8
724,640 - -0.2
724,641 + -0.9
724,642 + -0.4
724,646 + -1.0
724,646 + +0.5
724,776 - +1.7
724,778 - -0.0
724,780 - -1.4
724,797 - -0.5
724,927 + 14071 mRNA_5703 0.11 +0.5
725,043 + 14071 mRNA_5703 0.16 -0.9
725,243 - 14071 mRNA_5703 0.24 +0.0
725,244 - 14071 mRNA_5703 0.24 -2.0
725,571 - 14071 mRNA_5703 0.39 +2.7
725,673 - 14071 mRNA_5703 0.43 +2.2
725,807 - 14071 mRNA_5703 0.49 +0.7
725,960 - 14071 mRNA_5703 0.55 -0.8
725,963 - 14071 mRNA_5703 0.56 +1.6
725,974 + 14071 mRNA_5703 0.56 -0.3
726,049 - 14071 mRNA_5703 0.59 +1.5
726,655 - 14071 mRNA_5703 0.86 +0.1
726,690 - 14071 mRNA_5703 0.87 -0.3
726,969 + -0.7
727,144 - -1.5
727,162 + +0.7
727,230 + +1.6
727,259 - -0.0
727,275 - -1.2
727,289 - +0.3
727,295 + +1.5
727,317 - -1.0
727,318 + +0.1
727,319 + -1.3
727,338 + +0.6
727,348 - +0.1
727,349 + +0.6
727,359 + +1.8
727,468 - +1.0
727,473 + +0.2
727,483 - +0.1
727,504 + +0.2
727,518 - +1.0
727,530 + +0.8
727,538 + +0.1
727,608 - +0.3
727,696 - +0.9
727,697 - +1.1
727,728 + -0.4
727,736 + -1.9
727,745 + -0.0
727,749 + -1.4
727,866 - -0.3
727,875 + +0.1
727,891 + -1.5
727,892 - +0.6
727,903 - -0.4

Or see this region's nucleotide sequence