Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5706

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14073 and 14074 overlap by 26 nucleotides mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731,059 to 731,970 14073 mRNA_5706: 14074 - Hypothetical Protein, at 731,945 to 733,165 14074

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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731,155 - 14073 mRNA_5705 0.11 +1.1
731,181 - 14073 mRNA_5705 0.13 -2.2
731,212 + 14073 mRNA_5705 0.17 +1.9
731,802 - 14073 mRNA_5705 0.81 -0.2
732,081 + 14074 mRNA_5706 0.11 +0.1
732,085 - 14074 mRNA_5706 0.11 +0.5
732,360 + 14074 mRNA_5706 0.34 +2.1
732,377 + 14074 mRNA_5706 0.35 +0.5
732,381 + 14074 mRNA_5706 0.36 -0.3
732,655 + 14074 mRNA_5706 0.58 +0.9
732,675 + 14074 mRNA_5706 0.60 +0.1
732,845 + 14074 mRNA_5706 0.74 +1.9
733,406 + -1.4
733,554 + -0.2
733,826 + +0.8
733,897 - +1.3
734,113 - -1.1
734,145 + -0.8

Or see this region's nucleotide sequence