Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5721

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14088 and 14089 are separated by 350 nucleotides14089 and 14090 are separated by 210 nucleotides mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767,473 to 768,381 14088 mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768,732 to 770,042 14089 mRNA_5722: 14090 - SUPERFAMILY--SSF52047, at 770,253 to 773,842 14090

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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768,751 - -0.1
769,199 - 14089 mRNA_5721 0.36 -0.9
769,237 + 14089 mRNA_5721 0.39 +1.1
769,397 - 14089 mRNA_5721 0.51 -0.1
769,503 - 14089 mRNA_5721 0.59 +1.6
769,654 - 14089 mRNA_5721 0.70 +0.6
769,779 - 14089 mRNA_5721 0.80 +1.0
770,223 - +0.4
770,399 - +1.4
770,623 - 14090 mRNA_5722 0.10 -0.2

Or see this region's nucleotide sequence