Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5722

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14089 and 14090 are separated by 210 nucleotides14090 and 14091 are separated by 349 nucleotides mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768,732 to 770,042 14089 mRNA_5722: 14090 - SUPERFAMILY--SSF52047, at 770,253 to 773,842 14090 mRNA_5723: 14091 - K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase, at 774,192 to 776,044 14091

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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769,397 - 14089 mRNA_5721 0.51 -0.1
769,503 - 14089 mRNA_5721 0.59 +1.6
769,654 - 14089 mRNA_5721 0.70 +0.6
769,779 - 14089 mRNA_5721 0.80 +1.0
770,223 - +0.4
770,399 - +1.4
770,623 - 14090 mRNA_5722 0.10 -0.2
771,267 + 14090 mRNA_5722 0.28 +1.1
771,268 + 14090 mRNA_5722 0.28 +0.7
771,334 - 14090 mRNA_5722 0.30 -0.8
771,343 - 14090 mRNA_5722 0.30 +0.3
771,506 - 14090 mRNA_5722 0.35 -0.5
772,058 + 14090 mRNA_5722 0.50 +0.4
772,193 + 14090 mRNA_5722 0.54 +2.2
772,677 - 14090 mRNA_5722 0.68 -0.2
772,814 + 14090 mRNA_5722 0.71 +1.4
772,995 + 14090 mRNA_5722 0.76 -0.8
773,101 - 14090 mRNA_5722 0.79 -0.6
773,403 + 14090 mRNA_5722 0.88 +0.0
773,522 - -2.1
773,821 - +0.4
773,822 + -1.4
773,990 + +0.3
774,104 - +0.7
774,140 - -0.6
774,282 - -0.2
774,465 + 14091 mRNA_5723 0.15 -0.3

Or see this region's nucleotide sequence