Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5725

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14092 and 14093 are separated by 95 nucleotides14093 and 14094 are separated by 362 nucleotides mRNA_5724: 14092 - K05310 GPI7 ethanolaminephosphotransferase, at 776,159 to 779,515 14092 mRNA_5725: 14093 - K03234 EEF2 elongation factor 2, at 779,611 to 783,273 14093 mRNA_5726: 14094 - KOG2539 Mitochondrial/chloroplast ribosome small subunit component, at 783,636 to 785,944 14094

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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779,117 - 14092 mRNA_5724 0.88 +0.2
779,125 + 14092 mRNA_5724 0.88 +0.3
779,125 - 14092 mRNA_5724 0.88 -1.2
779,130 + 14092 mRNA_5724 0.89 +0.2
779,288 + -0.7
779,296 + +0.1
779,298 - +1.0
779,443 + +0.6
779,571 + +0.1
779,621 + -1.4
779,624 - +0.5
779,627 + -0.1
779,630 - +1.4
779,630 - -0.4
779,635 + -0.8
779,636 - +0.4
779,639 + -0.3
779,640 - -0.9
779,658 - +0.3
780,907 - 14093 mRNA_5725 0.35 -1.1
783,594 + +2.6
783,601 - -3.1
783,603 + +0.6
783,604 + -0.4

Or see this region's nucleotide sequence