Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5731

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14099 and 14100 are separated by 486 nucleotides mRNA_5731: 14099 - Hypothetical Protein, at 797,618 to 798,076 14099 mRNA_5732: 14100 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 798,563 to 800,717 14100

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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797,429 + -0.2
797,460 - -2.0
797,578 - -0.4
797,583 + +0.3
797,718 - 14099 mRNA_5731 0.22 +1.4
797,721 + 14099 mRNA_5731 0.22 +0.8
797,727 + 14099 mRNA_5731 0.24 -0.2
797,740 - 14099 mRNA_5731 0.27 +0.1
797,747 + 14099 mRNA_5731 0.28 +0.7
797,757 + 14099 mRNA_5731 0.30 -0.0
797,991 - 14099 mRNA_5731 0.81 +0.2
798,449 + +2.4
798,468 + -0.1
798,470 + +0.1
798,480 + -0.5
798,649 + +0.5
798,935 + 14100 mRNA_5732 0.17 +0.3

Or see this region's nucleotide sequence