Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5734

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14102 and 14103 are separated by 464 nucleotides mRNA_5734: 14102 - K01183 E3.2.1.14 chitinase, at 805,175 to 807,034 14102 mRNA_5735: 14103 - K12828 SF3B1, SAP155 splicing factor 3B subunit 1, at 807,499 to 811,509 14103

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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804,229 - -0.8
804,344 - -3.1
804,686 + -3.1
804,785 - -0.6
805,079 - -0.2
805,082 + -0.9
805,216 - +0.7
805,956 + 14102 mRNA_5734 0.42 -1.4
806,821 + 14102 mRNA_5734 0.88 -0.0
807,100 + +0.8
807,111 - -1.0
807,116 + -0.3
807,233 - +0.3
807,245 + +0.5
807,257 - +0.7
807,405 - +0.5
807,409 - +0.4
807,412 + +0.1
807,415 - +0.3
807,421 + +0.1
807,425 + +1.8
807,434 - +1.1
807,435 + +1.5
807,475 + +3.4

Or see this region's nucleotide sequence