Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5751

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14118 and 14119 are separated by 435 nucleotides14119 and 14120 are separated by 856 nucleotides mRNA_5750: 14118 - KOG2306 Uncharacterized conserved protein, at 853,248 to 855,227 14118 mRNA_5751: 14119 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 855,663 to 858,482 14119 mRNA_5752: 14120 - KOG0236 Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family), at 859,339 to 859,824 14120

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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854,934 + 14118 mRNA_5750 0.85 +0.5
854,986 - 14118 mRNA_5750 0.88 +0.9
855,101 + +1.9
855,114 - +0.0
855,129 + +0.6
855,143 + -0.6
855,145 + +0.7
855,153 - -0.4
855,424 - +0.1
855,433 + +1.7
855,439 - +0.2
855,483 + -1.8
855,577 + -0.3
855,587 + +0.5
855,903 - -1.0
856,082 - 14119 mRNA_5751 0.15 -0.3
856,129 - 14119 mRNA_5751 0.17 +0.3
856,256 + 14119 mRNA_5751 0.21 +0.3
856,296 + 14119 mRNA_5751 0.22 +0.3
856,423 - 14119 mRNA_5751 0.27 +0.7
856,681 - 14119 mRNA_5751 0.36 +0.4
856,752 - 14119 mRNA_5751 0.39 -1.0
857,277 + 14119 mRNA_5751 0.57 +0.5
857,749 - 14119 mRNA_5751 0.74 -0.1
857,853 - 14119 mRNA_5751 0.78 +1.4
858,012 + 14119 mRNA_5751 0.83 +0.3
858,040 + 14119 mRNA_5751 0.84 -1.6
858,344 - -0.9
858,468 - +0.0
858,599 - -0.0
858,627 + +0.8
858,680 - +0.2
858,712 - +0.9
858,761 + -0.4
858,761 - -0.6
858,784 + +0.0
858,787 + +0.3
858,802 - -1.0
858,812 + +1.2
858,818 + -0.0
858,914 + -1.4
858,917 - -0.4
858,925 - +0.1
858,946 - +0.1
859,002 + -0.4
859,038 - +1.3
859,041 - +0.6
859,063 + +0.1
859,106 - -0.3
859,107 + -1.1
859,235 - -0.8
859,247 + +0.4
859,250 - -0.5
859,354 + -0.2
859,357 + -0.6
859,379 - +0.4

Or see this region's nucleotide sequence