Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5758

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14125 and 14126 are separated by 284 nucleotides14126 and 14127 are separated by 862 nucleotides mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872,220 to 874,136 14125 mRNA_5758: 14126 - K00627 DLAT, aceF, pdhC pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 874,421 to 875,943 14126 mRNA_5759: 14127 - K14769 UTP11 U3 small nucleolar RNA-associated protein 11, at 876,806 to 878,161 14127

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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873,516 + 14125 mRNA_5757 0.68 +2.7
873,646 + 14125 mRNA_5757 0.74 -0.7
873,683 + 14125 mRNA_5757 0.76 +1.9
873,811 + 14125 mRNA_5757 0.83 +1.6
874,102 - -0.6
874,215 - +0.8
876,349 + -1.2
876,440 - -0.1
876,455 - -0.4
876,456 + -0.3
876,459 - +0.2
876,471 - -0.0
876,472 - +0.2
876,475 - +0.0
876,475 - -2.4
876,476 + +0.3
876,476 - -0.4
876,476 + -2.1
876,482 + -0.4
876,591 - +0.8
876,597 - +0.3
876,616 - -0.6
876,625 + +0.2
876,626 - -0.1
876,628 + +0.1
876,631 + -0.8
876,634 + +0.6
876,779 + +1.0
876,801 + -0.8

Or see this region's nucleotide sequence