Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5779

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14146 and 14147 are separated by 473 nucleotides14147 and 14148 are separated by 306 nucleotides mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639 14146 mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925,113 to 926,759 14147 mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208 14148

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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924,561 + -1.5
924,561 + -0.4
924,571 - -0.3
924,571 - +1.5
924,572 + +0.5
924,694 + +1.6
925,084 + +0.5
926,900 + -0.5
926,925 + +0.5
926,933 + -0.4
926,969 - +1.0

Or see this region's nucleotide sequence