Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5783

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14150 and 14151 are separated by 202 nucleotides14151 and 14152 overlap by 2 nucleotides mRNA_5782: 14150 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 931,244 to 933,171 14150 mRNA_5783: 14151 - KOG4623 Uncharacterized conserved protein, at 933,374 to 935,462 14151 mRNA_5784: 14152 - Hypothetical Protein, at 935,461 to 936,039 14152

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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932,375 - 14150 mRNA_5782 0.59 +1.0
932,489 + 14150 mRNA_5782 0.65 -1.0
933,109 - -0.6
933,121 + +0.9
933,146 + +0.7
933,342 - +0.4
933,390 + +0.9
933,423 - -2.3
933,525 - +0.8
933,599 - 14151 mRNA_5783 0.11 +1.1
933,953 - 14151 mRNA_5783 0.28 -3.2
934,241 - 14151 mRNA_5783 0.42 -1.2
934,430 - 14151 mRNA_5783 0.51 -1.7
934,735 - 14151 mRNA_5783 0.65 -0.2
934,842 + 14151 mRNA_5783 0.70 +0.4
934,849 + 14151 mRNA_5783 0.71 -0.3
934,994 - 14151 mRNA_5783 0.78 -0.3
935,042 + 14151 mRNA_5783 0.80 +0.4
935,115 - 14151 mRNA_5783 0.83 +1.0
935,430 - -1.4
935,451 + +0.0
935,459 + +0.6
935,570 + 14152 mRNA_5784 0.19 +0.6
935,590 - 14152 mRNA_5784 0.22 -1.0
935,597 + 14152 mRNA_5784 0.23 -1.0
935,748 - 14152 mRNA_5784 0.50 +0.3
935,834 - 14152 mRNA_5784 0.64 +0.1
936,039 + +0.6
936,052 + -0.1
936,136 + -0.1
936,173 + -0.2
936,188 + +0.5
936,326 + +0.5

Or see this region's nucleotide sequence