Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5808

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14175 and 14176 are separated by 207 nucleotides14176 and 14177 are separated by 116 nucleotides mRNA_5807: 14175 - HMMPfam-Protein of unknown function (DUF2638)-PF10937, at 986,328 to 987,350 14175 mRNA_5808: 14176 - HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695, at 987,558 to 988,212 14176 mRNA_5809: 14177 - KOG2979 Protein involved in DNA repair, at 988,329 to 990,216 14177

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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987,044 - 14175 mRNA_5807 0.70 -1.5
987,317 + -1.1
987,326 + +0.2
987,333 + -0.9
987,468 + +1.1
987,474 + +0.3
987,508 + -1.9
987,888 - 14176 mRNA_5808 0.50 -1.5
987,905 + 14176 mRNA_5808 0.53 -1.2
988,185 + -3.3
988,185 + -1.8
988,206 + -0.7
988,329 + -1.4
988,360 + -2.4
988,489 - +0.7
988,620 - 14177 mRNA_5809 0.15 +0.0
988,761 - 14177 mRNA_5809 0.23 -2.7

Or see this region's nucleotide sequence