Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5812

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14179 and 14180 are separated by 255 nucleotides14180 and 14181 are separated by 189 nucleotides mRNA_5811: 14179 - K01599 hemE, UROD uroporphyrinogen decarboxylase, at 992,194 to 993,567 14179 mRNA_5812: 14180 - K02831 RAD53 ser/thr/tyr protein kinase RAD53, at 993,823 to 996,800 14180 mRNA_5813: 14181 - K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein, at 996,990 to 1,000,538 14181

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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993,598 - -0.1
993,609 - -0.8
993,615 - -0.9
993,711 - +1.2
993,781 - +0.3
993,785 - +0.5
993,901 + +0.3
993,902 - +0.7
993,906 - -0.7
993,925 - +1.6
994,060 + +0.5
994,100 + -0.3
994,138 + 14180 mRNA_5812 0.11 +2.1
994,208 - 14180 mRNA_5812 0.13 +1.2
994,512 - 14180 mRNA_5812 0.23 +2.0
994,643 + 14180 mRNA_5812 0.28 -0.1
994,773 - 14180 mRNA_5812 0.32 -0.3
994,787 + 14180 mRNA_5812 0.32 -1.1
994,801 + 14180 mRNA_5812 0.33 +0.9
995,086 - 14180 mRNA_5812 0.42 +0.2
995,183 - 14180 mRNA_5812 0.46 -1.2
995,513 - 14180 mRNA_5812 0.57 -0.0
995,532 + 14180 mRNA_5812 0.57 -0.7
995,952 + 14180 mRNA_5812 0.71 -1.9
996,093 + 14180 mRNA_5812 0.76 -0.1
996,911 - -0.9
996,947 - +0.2
996,957 - +0.3
996,964 - +1.4
996,967 - +1.8
997,279 - +0.7
997,297 + -0.7
997,313 - -0.6
997,429 - 14181 mRNA_5813 0.12 -0.4
997,536 + 14181 mRNA_5813 0.15 +1.2

Or see this region's nucleotide sequence