Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5820

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14187 and 14188 are separated by 184 nucleotides14188 and 14189 are separated by 102 nucleotides mRNA_5819: 14187 - K10761 THG1 tRNA(His) guanylyltransferase, at 1,019,559 to 1,020,828 14187 mRNA_5820: 14188 - K11763 RSC9 chromatin structure-remodeling complex subunit RSC9, at 1,021,013 to 1,023,514 14188 mRNA_5821: 14189 - SUPERFAMILY--SSF52047, at 1,023,617 to 1,025,042 14189

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,022,240 - 14188 mRNA_5820 0.49 +0.5
1,022,497 + 14188 mRNA_5820 0.59 -1.2
1,022,778 + 14188 mRNA_5820 0.71 -0.5
1,023,834 + 14189 mRNA_5821 0.15 +0.8
1,023,852 + 14189 mRNA_5821 0.16 -1.4
1,023,971 - 14189 mRNA_5821 0.25 -1.1
1,024,143 - 14189 mRNA_5821 0.37 -0.8
1,024,270 - 14189 mRNA_5821 0.46 -1.3
1,024,278 - 14189 mRNA_5821 0.46 +1.2

Or see this region's nucleotide sequence