Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5831

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14198 and 14199 are separated by 136 nucleotides14199 and 14200 are separated by 272 nucleotides mRNA_5830: 14198 - HMMPfam-Mitochondrial protein Pet127-PF08634, at 1,040,175 to 1,043,789 14198 mRNA_5831: 14199 - KOG1198 Zinc-binding oxidoreductase, at 1,043,926 to 1,045,308 14199 mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1,045,581 to 1,047,659 14200

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,043,893 + +0.0
1,044,051 + -0.9
1,044,087 - 14199 mRNA_5831 0.12 +0.4
1,044,597 - 14199 mRNA_5831 0.49 +0.8
1,044,969 - 14199 mRNA_5831 0.75 +0.9
1,045,059 - 14199 mRNA_5831 0.82 +0.1
1,045,060 + 14199 mRNA_5831 0.82 -2.3
1,045,070 + 14199 mRNA_5831 0.83 -0.3
1,045,241 + +0.1
1,045,360 - -0.3
1,045,376 + +0.5
1,045,388 + +1.1
1,045,396 - +0.3
1,046,243 + 14200 mRNA_5832 0.32 +1.2

Or see this region's nucleotide sequence