Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5833

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14200 and 14201 are separated by 101 nucleotides14201 and 14202 are separated by 277 nucleotides mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1,045,581 to 1,047,659 14200 mRNA_5833: 14201 - K09705 K09705 uncharacterized protein, at 1,047,761 to 1,048,668 14201 mRNA_5834: 14202 - HMMPfam-Protein of unknown function (DUF1688)-PF07958, at 1,048,946 to 1,050,486 14202

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,047,878 - 14201 mRNA_5833 0.13 +0.5
1,048,201 - 14201 mRNA_5833 0.48 -1.7
1,048,396 + 14201 mRNA_5833 0.70 +1.7
1,048,429 - 14201 mRNA_5833 0.74 -2.0
1,048,431 + 14201 mRNA_5833 0.74 -0.9
1,048,442 + 14201 mRNA_5833 0.75 +1.1
1,048,512 + 14201 mRNA_5833 0.83 -0.1
1,048,537 - 14201 mRNA_5833 0.85 +2.0
1,048,539 + 14201 mRNA_5833 0.86 +1.9
1,048,554 - 14201 mRNA_5833 0.87 -2.1
1,048,739 + +4.0
1,048,748 + +0.4
1,048,774 - +0.3
1,048,875 - +0.2
1,048,943 - +0.8
1,048,995 - +0.3
1,049,020 - -0.4
1,049,027 + +0.2
1,049,034 + +0.3
1,049,466 - 14202 mRNA_5834 0.34 -0.0

Or see this region's nucleotide sequence