Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5879

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14246 and 14247 are separated by 341 nucleotides14247 and 14248 are separated by 275 nucleotides mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1,146,916 to 1,148,820 14246 mRNA_5879: 14247 - KOG2624 Triglyceride lipase-cholesterol esterase, at 1,149,162 to 1,152,280 14247 mRNA_5880: 14248 - HMMPfam-Transglycosylase SLT domain-PF01464,SUPERFAMILY--SSF53955, at 1,152,556 to 1,154,002 14248

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,148,852 + +1.0
1,148,854 + +0.6
1,148,912 + +0.3
1,148,918 - -1.1
1,148,928 - +0.2
1,148,928 + +0.9
1,148,939 + -0.4
1,148,940 - +0.4
1,148,942 + +0.8
1,148,942 + -0.4
1,148,947 - +0.7
1,148,948 - -0.0
1,148,949 - +0.8
1,148,957 + +0.3
1,148,957 - +0.4
1,148,987 + +1.1
1,149,088 - +0.0
1,149,107 - -2.0
1,149,108 + -1.0
1,149,114 - +0.4
1,149,137 - +0.6
1,149,141 - -1.3
1,149,151 - +1.0
1,149,151 - +2.1
1,149,153 - -0.9
1,149,182 - -0.0
1,149,290 - -0.9
1,149,309 + +0.5
1,149,441 + +1.5
1,149,474 + 14247 mRNA_5879 0.10 -0.5
1,149,606 + 14247 mRNA_5879 0.14 -1.3
1,149,701 - 14247 mRNA_5879 0.17 +1.1
1,149,720 - 14247 mRNA_5879 0.18 +0.2
1,149,891 - 14247 mRNA_5879 0.23 -0.8
1,150,309 - 14247 mRNA_5879 0.37 +1.3
1,150,748 + 14247 mRNA_5879 0.51 -0.9
1,150,874 - 14247 mRNA_5879 0.55 +0.4
1,151,635 + 14247 mRNA_5879 0.79 +0.3
1,151,731 + 14247 mRNA_5879 0.82 +2.0
1,152,021 + -1.4
1,152,052 + -0.5
1,152,059 + -0.8
1,152,494 + +0.5
1,152,574 - +0.2
1,152,667 + -1.0
1,152,703 + 14248 mRNA_5880 0.10 +0.1
1,152,760 - 14248 mRNA_5880 0.14 -2.9
1,152,906 - 14248 mRNA_5880 0.24 +1.3
1,153,025 - 14248 mRNA_5880 0.32 -0.4
1,153,049 - 14248 mRNA_5880 0.34 +0.5
1,153,056 + 14248 mRNA_5880 0.35 +0.3
1,153,149 - 14248 mRNA_5880 0.41 +0.8
1,153,162 - 14248 mRNA_5880 0.42 +0.7
1,153,164 + 14248 mRNA_5880 0.42 -1.5
1,153,227 + 14248 mRNA_5880 0.46 -0.6

Or see this region's nucleotide sequence