Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5885

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14252 and 14253 are separated by 168 nucleotides14253 and 14254 are separated by 855 nucleotides mRNA_5884: 14252 - K13830 ARO1 pentafunctional AROM polypeptide, at 1,160,549 to 1,165,878 14252 mRNA_5885: 14253 - KOG1424 Predicted GTP-binding protein MMR1, at 1,166,047 to 1,168,638 14253 mRNA_5886: 14254 - Hypothetical Protein, at 1,169,494 to 1,170,027 14254

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,165,072 + 14252 mRNA_5884 0.85 -0.5
1,165,935 - +1.0
1,166,076 - +0.8
1,166,097 + +0.5
1,166,115 + -0.1
1,166,380 + 14253 mRNA_5885 0.13 +0.4
1,167,091 + 14253 mRNA_5885 0.40 -0.3
1,167,781 - 14253 mRNA_5885 0.67 -1.0
1,168,407 - +0.8
1,168,541 - +2.2
1,168,660 + +0.5
1,169,210 - -1.0

Or see this region's nucleotide sequence