Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5895

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14262 and 14263 are separated by 255 nucleotides14263 and 14264 are separated by 201 nucleotides mRNA_5894: 14262 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1,186,921 to 1,189,596 14262 mRNA_5895: 14263 - K17255 GDI1_2 Rab GDP dissociation inhibitor, at 1,189,852 to 1,191,772 14263 mRNA_5896: 14264 - K07573 CSL4, EXOSC1 exosome complex component CSL4, at 1,191,974 to 1,192,832 14264

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,188,919 - 14262 mRNA_5894 0.75 +0.9
1,189,387 + +0.9
1,189,831 - +1.5
1,191,870 + +1.4
1,191,871 + -0.0
1,191,871 - +0.3
1,192,300 + 14264 mRNA_5896 0.38 -0.8
1,192,306 - 14264 mRNA_5896 0.39 -0.7
1,192,740 - 14264 mRNA_5896 0.89 -0.3

Or see this region's nucleotide sequence