Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5912

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14279 and 14280 are separated by 546 nucleotides14280 and 14281 are separated by 109 nucleotides mRNA_5911: 14279 - ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026, at 1,224,353 to 1,227,750 14279 mRNA_5912: 14280 - K11375 ELP4 elongator complex protein 4, at 1,228,297 to 1,229,962 14280 mRNA_5913: 14281 - K14455 GOT2 aspartate aminotransferase, mitochondrial, at 1,230,072 to 1,231,795 14281

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,227,650 - +1.3
1,227,831 + +0.8
1,228,417 - +0.6
1,228,665 + 14280 mRNA_5912 0.22 +1.0
1,228,711 - 14280 mRNA_5912 0.25 -1.4
1,229,444 + 14280 mRNA_5912 0.69 +0.3
1,229,900 + -1.6
1,229,904 + -0.6
1,230,360 + 14281 mRNA_5913 0.17 -2.0
1,230,532 + 14281 mRNA_5913 0.27 -2.6
1,230,937 - 14281 mRNA_5913 0.50 -2.4
1,230,956 + 14281 mRNA_5913 0.51 -1.8
1,230,961 + 14281 mRNA_5913 0.52 -0.9

Or see this region's nucleotide sequence