Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5928

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14295 and 14296 are separated by 645 nucleotides14296 and 14297 are separated by 266 nucleotides mRNA_5927: 14295 - K02979 RP-S28e, RPS28 small subunit ribosomal protein S28e, at 1,256,720 to 1,257,399 14295 mRNA_5928: 14296 - KOG3472 Predicted small membrane protein, at 1,258,045 to 1,258,837 14296 mRNA_5929: 14297 - Hypothetical Protein, at 1,259,104 to 1,259,543 14297

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
1,257,695 - -1.9
1,257,728 - +0.4
1,257,851 - -1.1
1,258,001 - -0.8
1,258,278 + 14296 mRNA_5928 0.29 -0.9
1,258,282 - 14296 mRNA_5928 0.30 +0.3
1,258,455 - 14296 mRNA_5928 0.52 -0.1
1,258,557 + 14296 mRNA_5928 0.65 -1.0
1,258,664 - 14296 mRNA_5928 0.78 -0.3
1,259,001 - -0.4
1,259,023 + +0.9
1,259,180 + 14297 mRNA_5929 0.17 +0.5
1,259,302 - 14297 mRNA_5929 0.45 -0.5
1,259,308 - 14297 mRNA_5929 0.46 -1.2
1,259,449 - 14297 mRNA_5929 0.78 -0.0
1,259,456 - 14297 mRNA_5929 0.80 -1.0
1,259,508 - +1.4
1,259,602 - +0.8
1,259,756 + -1.1

Or see this region's nucleotide sequence