Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5935

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14302 and 14303 are separated by 334 nucleotides14303 and 14304 are separated by 450 nucleotides mRNA_5934: 14302 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 1,269,000 to 1,270,285 14302 mRNA_5935: 14303 - HMMPfam-Homeobox KN domain-PF05920,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SUPERFAMILY--SSF46689, at 1,270,620 to 1,271,852 14303 mRNA_5936: 14304 - HMMPfam-Homeobox domain-PF00046,HMMPfam-Predicted membrane protein (DUF2231)-PF09990,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689, at 1,272,303 to 1,276,279 14304

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
1,269,723 - 14302 mRNA_5934 0.56 -1.0
1,269,783 + 14302 mRNA_5934 0.61 +0.7
1,270,024 - 14302 mRNA_5934 0.80 -1.7
1,270,157 - +1.0
1,270,171 - -0.4
1,270,173 + +1.1
1,270,312 - -2.8
1,270,327 - +1.2
1,270,344 + -0.8
1,270,386 + -0.3
1,270,448 + +1.1
1,270,461 + +0.1
1,270,467 - -0.6
1,270,486 + -0.5
1,270,497 + -1.1
1,270,669 + +0.7
1,270,787 - 14303 mRNA_5935 0.14 -0.1
1,270,916 - 14303 mRNA_5935 0.24 -0.1
1,272,142 - +0.3
1,272,419 + +0.5
1,272,527 + +2.8
1,272,567 - -0.2

Or see this region's nucleotide sequence