Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5938

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14305 and 14306 are separated by 974 nucleotides14306 and 14307 are separated by 101 nucleotides mRNA_5937: 14305 - Hypothetical Protein, at 1,276,675 to 1,277,757 14305 mRNA_5938: 14306 - Hypothetical Protein, at 1,278,732 to 1,279,189 14306 mRNA_5939: 14307 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 1,279,291 to 1,281,884 14307

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,277,998 + -0.2
1,278,070 + +0.4
1,278,073 - +2.4
1,278,074 + +0.1
1,278,102 - +1.1
1,278,114 - +0.4
1,278,143 + +0.2
1,278,254 - -0.2
1,278,430 - -0.9
1,278,434 - -0.1
1,278,487 + -0.7
1,278,537 - +0.3
1,278,553 + +0.4
1,278,554 + +0.8
1,278,612 + -0.0
1,278,665 + -2.4
1,278,692 - +0.2
1,278,718 + +0.7
1,278,724 + -0.9
1,278,829 - 14306 mRNA_5938 0.21 +0.8
1,278,842 + 14306 mRNA_5938 0.24 -1.1
1,278,906 + 14306 mRNA_5938 0.38 +0.7
1,278,906 - 14306 mRNA_5938 0.38 +0.7
1,279,002 + 14306 mRNA_5938 0.59 +0.9
1,279,161 + -0.7
1,279,321 + +0.3
1,279,503 + -0.4
1,279,695 + 14307 mRNA_5939 0.16 -1.0
1,280,021 + 14307 mRNA_5939 0.28 -1.2

Or see this region's nucleotide sequence