Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5960

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14327 and 14328 are separated by 311 nucleotides14328 and 14329 are separated by 223 nucleotides mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1,334,549 to 1,337,487 14327 mRNA_5960: 14328 - Hypothetical Protein, at 1,337,799 to 1,338,235 14328 mRNA_5961: 14329 - HMMPfam-F-box-like-PF12937, at 1,338,459 to 1,339,688 14329

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,337,199 + +1.4
1,337,703 + -1.3
1,337,914 + 14328 mRNA_5960 0.26 +0.8
1,338,010 - 14328 mRNA_5960 0.48 -0.7
1,338,108 - 14328 mRNA_5960 0.71 -0.0
1,338,117 - 14328 mRNA_5960 0.73 +0.7
1,338,160 + 14328 mRNA_5960 0.83 +1.0
1,338,163 + 14328 mRNA_5960 0.83 -1.3
1,338,703 - 14329 mRNA_5961 0.20 +0.4
1,338,801 + 14329 mRNA_5961 0.28 -0.3
1,338,835 + 14329 mRNA_5961 0.31 +0.3
1,338,886 - 14329 mRNA_5961 0.35 +0.0
1,338,886 - 14329 mRNA_5961 0.35 +0.7
1,338,950 + 14329 mRNA_5961 0.40 +0.7
1,338,950 + 14329 mRNA_5961 0.40 +0.6
1,339,036 + 14329 mRNA_5961 0.47 -0.3
1,339,153 + 14329 mRNA_5961 0.56 +1.9

Or see this region's nucleotide sequence