Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5965

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14331 and 14332 are separated by 228 nucleotides14332 and 14333 are separated by 77 nucleotides14333 and 14334 are separated by 432 nucleotides mRNA_5963: 14331 - Interpro F-box-like, at 1,342,059 to 1,343,538 14331 mRNA_5964: 14332 - Hypothetical Protein, at 1,343,767 to 1,344,081 14332 mRNA_5965: 14333 - Hypothetical Protein, at 1,344,159 to 1,346,250 14333 mRNA_5966: 14334 - KOG1950 Glycosyl transferase, family 8 - glycogenin, at 1,346,683 to 1,347,941 14334

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,343,174 - 14331 mRNA_5963 0.75 +0.4
1,343,186 - 14331 mRNA_5963 0.76 +2.0
1,343,194 - 14331 mRNA_5963 0.77 +2.2
1,343,302 - 14331 mRNA_5963 0.84 -0.7
1,343,327 - 14331 mRNA_5963 0.86 -0.5
1,343,409 + +1.0
1,343,438 - +0.7
1,343,449 - -0.2
1,343,453 + +1.3
1,343,588 + +0.3
1,343,644 - +2.1
1,343,763 + +1.8
1,343,778 - -0.1
1,343,839 + 14332 mRNA_5964 0.23 -0.8
1,343,876 - 14332 mRNA_5964 0.35 +0.1
1,343,890 - 14332 mRNA_5964 0.39 +1.0
1,343,900 + 14332 mRNA_5964 0.42 -2.1
1,343,902 + 14332 mRNA_5964 0.43 +1.3
1,343,996 + 14332 mRNA_5964 0.73 -0.1
1,344,009 - 14332 mRNA_5964 0.77 +0.3
1,344,024 + 14332 mRNA_5964 0.82 +0.2
1,344,031 - 14332 mRNA_5964 0.84 +2.4
1,344,043 + 14332 mRNA_5964 0.88 +0.6
1,344,078 - -1.0
1,344,094 - +1.0
1,344,164 - +3.2
1,344,205 + +0.8
1,344,328 + +0.6
1,344,377 + 14333 mRNA_5965 0.10 +0.5
1,344,588 - 14333 mRNA_5965 0.21 +1.2
1,344,917 - 14333 mRNA_5965 0.36 +1.2
1,345,016 - 14333 mRNA_5965 0.41 -0.5
1,345,023 - 14333 mRNA_5965 0.41 +0.5
1,345,026 - 14333 mRNA_5965 0.41 +0.2
1,345,031 + 14333 mRNA_5965 0.42 +1.9
1,345,032 + 14333 mRNA_5965 0.42 -1.8
1,345,151 - 14333 mRNA_5965 0.47 -0.1
1,345,426 - 14333 mRNA_5965 0.61 -1.4
1,345,442 + 14333 mRNA_5965 0.61 -0.7
1,345,636 + 14333 mRNA_5965 0.71 -0.0
1,345,713 - 14333 mRNA_5965 0.74 -1.7
1,345,718 + 14333 mRNA_5965 0.75 +1.0
1,345,831 - 14333 mRNA_5965 0.80 -1.9
1,345,999 - 14333 mRNA_5965 0.88 +1.4
1,346,002 + 14333 mRNA_5965 0.88 +0.3
1,346,005 + 14333 mRNA_5965 0.88 -0.6
1,346,007 + 14333 mRNA_5965 0.88 -0.6
1,346,008 - 14333 mRNA_5965 0.88 -0.2
1,346,029 + 14333 mRNA_5965 0.89 +0.1
1,346,038 + 14333 mRNA_5965 0.90 +0.0
1,346,160 - +0.3
1,346,169 - +0.9
1,346,179 + -1.8
1,346,194 + +0.1
1,346,309 + -1.2
1,346,321 - +1.1
1,346,322 + -0.7
1,346,330 - -1.1
1,346,357 - +0.7
1,346,455 - +1.0
1,346,488 - +0.1
1,346,490 + +0.8
1,346,492 + +1.2
1,346,495 + -0.4
1,346,501 - +0.5
1,346,503 + -0.4
1,346,510 + -1.2
1,346,510 - -0.4
1,346,511 + -0.4
1,346,516 + -1.1
1,346,551 - +0.4
1,346,552 - +0.9
1,346,557 - +0.4
1,346,558 + -0.5
1,346,560 + +0.6
1,346,581 + +0.1
1,346,582 - +0.7
1,346,583 - +1.3
1,346,589 - -0.1
1,346,590 + -0.6
1,346,590 + +1.1
1,346,592 + +0.9
1,346,595 - +0.8
1,346,596 - -1.7
1,346,598 - +0.3
1,346,600 - -0.4
1,346,609 - +2.4
1,346,610 - -1.3
1,346,612 + +1.0
1,346,617 - +0.3
1,346,623 + -0.1
1,346,624 + -1.2
1,346,626 + -1.1
1,346,628 + -0.4
1,346,628 - -1.7
1,346,646 - +0.4
1,346,750 - -1.2
1,346,774 + +2.6
1,346,786 + +1.2
1,346,801 - -0.9
1,346,951 + 14334 mRNA_5966 0.21 -1.6
1,347,187 - 14334 mRNA_5966 0.40 +0.6

Or see this region's nucleotide sequence