Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5988

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14355 and 14356 are separated by 136 nucleotides mRNA_5987: 14355 - HMMPfam-F-box-like-PF12937, at 1,385,071 to 1,386,352 14355 mRNA_5988: 14356 - K06111 EXOC4, SEC8 exocyst complex component 4, at 1,386,489 to 1,391,232 14356

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,385,518 - 14355 mRNA_5987 0.35 +0.2
1,385,568 + 14355 mRNA_5987 0.39 +1.7
1,385,580 - 14355 mRNA_5987 0.40 -1.2
1,385,622 + 14355 mRNA_5987 0.43 -0.3
1,385,640 - 14355 mRNA_5987 0.44 -1.3
1,385,718 + 14355 mRNA_5987 0.50 +0.9
1,385,761 + 14355 mRNA_5987 0.54 +0.2
1,385,766 + 14355 mRNA_5987 0.54 -1.6
1,385,810 + 14355 mRNA_5987 0.58 +0.2
1,385,907 + 14355 mRNA_5987 0.65 -0.1
1,385,910 - 14355 mRNA_5987 0.65 -1.4
1,386,060 - 14355 mRNA_5987 0.77 -2.7
1,386,077 + 14355 mRNA_5987 0.78 -0.3
1,386,089 - 14355 mRNA_5987 0.79 -0.0
1,386,095 - 14355 mRNA_5987 0.80 +0.1
1,386,103 - 14355 mRNA_5987 0.80 -0.5
1,386,202 + 14355 mRNA_5987 0.88 +0.4
1,386,314 + -0.7
1,386,563 - +0.6
1,386,630 - -0.4
1,386,730 + -1.6
1,386,747 + -0.5
1,386,783 - +0.4
1,386,930 + +0.7
1,386,980 - 14356 mRNA_5988 0.10 +0.4
1,387,021 + 14356 mRNA_5988 0.11 +0.8
1,387,107 + 14356 mRNA_5988 0.13 -1.8
1,387,213 - 14356 mRNA_5988 0.15 +2.1
1,387,231 + 14356 mRNA_5988 0.16 +3.3
1,387,238 + 14356 mRNA_5988 0.16 +0.6
1,387,774 + 14356 mRNA_5988 0.27 +1.9
1,387,842 + 14356 mRNA_5988 0.29 -1.8
1,387,844 + 14356 mRNA_5988 0.29 +0.4
1,387,845 - 14356 mRNA_5988 0.29 +2.2
1,387,855 - 14356 mRNA_5988 0.29 +1.3
1,387,991 + 14356 mRNA_5988 0.32 +2.7
1,387,992 - 14356 mRNA_5988 0.32 +1.8
1,388,065 + 14356 mRNA_5988 0.33 +3.5
1,388,167 - 14356 mRNA_5988 0.35 +2.8
1,388,366 + 14356 mRNA_5988 0.40 +1.6
1,388,526 + 14356 mRNA_5988 0.43 +1.1
1,388,600 + 14356 mRNA_5988 0.44 +2.3
1,388,672 - 14356 mRNA_5988 0.46 -0.2
1,388,680 - 14356 mRNA_5988 0.46 +2.1
1,388,988 - 14356 mRNA_5988 0.53 +0.7
1,391,232 - +0.5
1,391,400 - +1.1
1,391,680 - +0.0
1,392,122 + +0.9
1,392,145 + -0.2

Or see this region's nucleotide sequence