Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6005

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14372 and 14373 are separated by 283 nucleotides14373 and 14374 are separated by 328 nucleotides mRNA_6004: 14372 - SUPERFAMILY--SSF52047, at 1,435,103 to 1,436,492 14372 mRNA_6005: 14373 - Hypothetical Protein, at 1,436,776 to 1,437,486 14373 mRNA_6006: 14374 - Hypothetical Protein, at 1,437,815 to 1,438,982 14374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,436,159 + 14372 mRNA_6004 0.76 -0.0
1,436,251 + 14372 mRNA_6004 0.83 -1.3
1,436,254 - 14372 mRNA_6004 0.83 +0.2
1,436,419 + -0.4
1,436,688 - -0.6
1,436,701 + -1.4
1,436,741 + -0.0
1,436,823 + -0.4
1,436,845 + +0.2
1,436,965 - 14373 mRNA_6005 0.27 +0.5
1,437,453 + +2.6
1,437,876 - +0.6
1,437,923 - -2.9
1,438,005 - 14374 mRNA_6006 0.16 +1.1
1,438,284 - 14374 mRNA_6006 0.40 -0.5
1,438,351 + 14374 mRNA_6006 0.46 +0.5
1,438,408 + 14374 mRNA_6006 0.51 +1.5

Or see this region's nucleotide sequence