Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6089

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14456 and 14457 are separated by 440 nucleotides14457 and 14458 are separated by 617 nucleotides mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1,619,714 to 1,621,699 14456 mRNA_6089: 14457 - KOG3098 Uncharacterized conserved protein, at 1,622,140 to 1,623,844 14457 mRNA_6090: 14458 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,624,462 to 1,625,947 14458

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,621,142 + 14456 mRNA_6088 0.72 +1.8
1,621,156 + 14456 mRNA_6088 0.73 -0.2
1,621,310 - 14456 mRNA_6088 0.80 -0.6
1,621,315 - 14456 mRNA_6088 0.81 +0.1
1,621,435 - 14456 mRNA_6088 0.87 +0.4
1,621,572 - -1.1
1,621,578 + -1.3
1,621,605 - +0.6
1,621,731 - -1.8
1,621,733 + -0.8
1,621,735 + -0.3
1,621,735 + +0.9
1,621,756 - +1.0
1,622,062 - -1.2
1,622,191 - -2.1
1,622,525 - 14457 mRNA_6089 0.23 +1.1
1,622,610 - 14457 mRNA_6089 0.28 +1.2
1,622,655 - 14457 mRNA_6089 0.30 +0.9
1,622,699 - 14457 mRNA_6089 0.33 -0.3
1,622,705 - 14457 mRNA_6089 0.33 -0.4
1,623,014 - 14457 mRNA_6089 0.51 +1.5
1,623,166 + 14457 mRNA_6089 0.60 +0.1
1,623,341 - 14457 mRNA_6089 0.70 +0.4
1,623,625 - 14457 mRNA_6089 0.87 -0.2
1,623,770 - +0.4
1,623,791 + +2.0
1,623,792 + -2.4
1,623,811 - +1.6
1,623,983 - -0.5
1,624,065 - +0.1
1,624,069 - +1.3
1,624,081 - +0.6
1,624,105 - +0.9
1,624,212 + -0.7
1,624,215 - +0.4
1,624,226 + +0.8
1,624,242 + +0.4
1,624,243 - +1.4
1,624,251 + -1.9
1,624,296 + -0.1
1,624,365 + -0.2
1,624,369 - -0.0
1,624,370 + -2.1
1,624,382 - -1.8
1,624,485 + +0.9
1,624,505 - -0.5
1,624,525 + +2.1
1,624,538 + -0.7
1,624,557 - +0.5
1,624,652 + 14458 mRNA_6090 0.13 +0.9
1,624,716 - 14458 mRNA_6090 0.17 -2.9
1,624,831 - 14458 mRNA_6090 0.25 -0.2

Or see this region's nucleotide sequence