Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6112

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14479 and 14480 are separated by 84 nucleotides14480 and 14481 are separated by 127 nucleotides mRNA_6111: 14479 - Hypothetical Protein, at 16,061 to 17,629 14479 mRNA_6112: 14480 - K01785 galM, GALM aldose 1-epimerase, at 17,714 to 19,844 14480 mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19,972 to 24,805 14481

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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16,719 + 14479 mRNA_6111 0.42 +2.3
16,817 + 14479 mRNA_6111 0.48 +3.0
16,983 - 14479 mRNA_6111 0.59 -0.3
17,034 + 14479 mRNA_6111 0.62 -1.3
17,141 + 14479 mRNA_6111 0.69 +2.1
17,177 - 14479 mRNA_6111 0.71 +0.6
17,181 + 14479 mRNA_6111 0.71 -0.2
17,236 + 14479 mRNA_6111 0.75 +0.9
17,259 + 14479 mRNA_6111 0.76 -1.7
17,567 + -1.3
17,865 - -0.4
18,020 - 14480 mRNA_6112 0.14 +0.8
18,077 + 14480 mRNA_6112 0.17 -0.1
18,276 + 14480 mRNA_6112 0.26 +1.2
18,462 + 14480 mRNA_6112 0.35 +1.1
18,464 - 14480 mRNA_6112 0.35 +2.6
18,586 + 14480 mRNA_6112 0.41 -1.6
18,589 - 14480 mRNA_6112 0.41 +0.7
18,596 + 14480 mRNA_6112 0.41 -0.9
18,598 - 14480 mRNA_6112 0.41 -0.0
18,812 + 14480 mRNA_6112 0.52 +0.1
18,864 - 14480 mRNA_6112 0.54 +2.0
19,160 + 14480 mRNA_6112 0.68 +1.1
19,160 + 14480 mRNA_6112 0.68 -0.4
19,242 + 14480 mRNA_6112 0.72 -0.1
19,332 - 14480 mRNA_6112 0.76 +0.1
19,368 + 14480 mRNA_6112 0.78 +2.7
19,396 + 14480 mRNA_6112 0.79 +1.8
19,505 + 14480 mRNA_6112 0.84 -0.6
19,511 + 14480 mRNA_6112 0.84 +1.1
19,589 - 14480 mRNA_6112 0.88 -0.5
19,615 - 14480 mRNA_6112 0.89 -0.4
19,762 - +0.6
19,763 + -1.4
19,767 - +1.1
19,778 - +0.9
19,789 + -0.1
19,796 + +0.7
19,916 - +0.0
19,922 + +0.2
19,926 + +1.6
19,930 + +1.4
19,932 + +0.5
19,946 + +1.8
20,080 + +0.4
20,205 - -0.6
20,470 + 14481 mRNA_6113 0.10 -1.8
20,606 - 14481 mRNA_6113 0.13 -1.3
20,828 - 14481 mRNA_6113 0.18 -2.6

Or see this region's nucleotide sequence