Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6129

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14496 and 14497 are separated by 173 nucleotides14497 and 14498 are separated by 91 nucleotides mRNA_6128: 14496 - BLAST DEHA2B11858p [Debaryomyces hansenii CBS767], at 70,896 to 71,507 14496 mRNA_6129: 14497 - Hypothetical Protein, at 71,681 to 73,838 14497 mRNA_6130: 14498 - K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2, at 73,930 to 78,529 14498

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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70,720 - -3.2
70,828 + +0.7
70,837 - -0.1
70,846 - +1.0
70,999 + 14496 mRNA_6128 0.17 +0.6
71,031 + 14496 mRNA_6128 0.22 +0.5
71,151 + 14496 mRNA_6128 0.42 -1.4
71,296 + 14496 mRNA_6128 0.65 -0.4
71,420 - 14496 mRNA_6128 0.86 -0.6
71,440 + 14496 mRNA_6128 0.89 +0.7
71,443 - 14496 mRNA_6128 0.89 -0.3
71,451 + -0.5
71,470 + -0.5
71,560 + +1.2
71,884 + -2.1
72,444 + 14497 mRNA_6129 0.35 -1.8
72,727 + 14497 mRNA_6129 0.48 -0.1
73,080 - 14497 mRNA_6129 0.65 +0.9
73,152 - 14497 mRNA_6129 0.68 -0.9
73,165 - 14497 mRNA_6129 0.69 +1.0
73,449 + 14497 mRNA_6129 0.82 -0.4
73,588 - 14497 mRNA_6129 0.88 -3.1
73,730 - +0.5
73,752 + +1.3
73,882 + -0.4
73,902 + +1.1
73,902 - -0.8
73,907 - +0.7
73,911 + +0.1
73,915 + +0.1
73,922 + -1.2
73,922 - -1.2

Or see this region's nucleotide sequence