Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6152

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14519 and 14520 are separated by 347 nucleotides14520 and 14521 are separated by 820 nucleotides mRNA_6151: 14519 - Hypothetical Protein, at 124,674 to 126,819 14519 mRNA_6152: 14520 - HMMPfam-Slx4 endonuclease-PF09494, at 127,167 to 130,520 14520 mRNA_6153: 14521 - K00757 udp, UPP uridine phosphorylase, at 131,341 to 132,602 14521

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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126,269 - 14519 mRNA_6151 0.74 +0.3
126,332 + 14519 mRNA_6151 0.77 +0.5
126,435 - 14519 mRNA_6151 0.82 +0.1
126,460 + 14519 mRNA_6151 0.83 -1.5
126,465 - 14519 mRNA_6151 0.83 +1.4
126,597 - 14519 mRNA_6151 0.90 -1.1
126,733 - +0.0
126,734 - +0.4
126,744 - -0.4
126,750 + -1.4
126,757 - -0.3
126,868 + +1.1
126,879 + -2.1
127,015 - +0.1
127,040 + -0.4
127,191 + +0.6
127,202 - -1.2
128,021 + 14520 mRNA_6152 0.25 -0.2
128,053 - 14520 mRNA_6152 0.26 -2.4
128,199 - 14520 mRNA_6152 0.31 +0.4
128,936 + 14520 mRNA_6152 0.53 -2.9
130,249 - -2.5
130,854 + -1.8
130,888 - +0.9
130,889 + -1.1
131,021 + -0.4
131,152 - +0.9
131,169 + +0.1

Or see this region's nucleotide sequence