Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6153

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14520 and 14521 are separated by 820 nucleotides mRNA_6152: 14520 - HMMPfam-Slx4 endonuclease-PF09494, at 127,167 to 130,520 14520 mRNA_6153: 14521 - K00757 udp, UPP uridine phosphorylase, at 131,341 to 132,602 14521

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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130,854 + -1.8
130,888 - +0.9
130,889 + -1.1
131,021 + -0.4
131,152 - +0.9
131,169 + +0.1
131,575 - 14521 mRNA_6153 0.19 -1.0
131,631 + 14521 mRNA_6153 0.23 +1.0
131,860 - 14521 mRNA_6153 0.41 -0.1
132,029 + 14521 mRNA_6153 0.55 +0.2
132,148 + 14521 mRNA_6153 0.64 +0.3
132,402 - 14521 mRNA_6153 0.84 -0.2
132,455 + 14521 mRNA_6153 0.88 -0.8
132,710 + -0.3
132,931 + +1.3
133,134 - -0.1
133,280 - -0.2
133,280 + +0.5
133,297 + +0.8
133,297 + +0.5
133,299 + -0.2
133,347 - +1.0
133,402 - -1.3
133,449 - +0.9
133,449 - +0.2
133,456 + -0.7
133,459 - -0.5
133,459 - -1.3
133,462 + +0.3
133,474 - +1.1
133,474 - -0.2
133,475 + -0.7
133,476 - -0.2
133,498 - -0.4
133,498 + +0.2
133,506 + +0.2
133,509 + +1.5
133,597 + -1.8
133,600 - -0.2

Or see this region's nucleotide sequence