Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6157

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14524 and 14525 are separated by 74 nucleotides14525 and 14526 are separated by 495 nucleotides mRNA_6156: 14524 - Hypothetical Protein, at 140,453 to 141,456 14524 mRNA_6157: 14525 - Hypothetical Protein, at 141,531 to 141,923 14525 mRNA_6158: 14526 - BLAST RNA polymerase I specific initiation factor [Rhizocto..., at 142,419 to 143,531 14526

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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140,619 + 14524 mRNA_6156 0.17 -0.8
140,623 - 14524 mRNA_6156 0.17 +0.1
140,629 + 14524 mRNA_6156 0.18 -0.4
140,677 - 14524 mRNA_6156 0.22 -0.4
140,816 - 14524 mRNA_6156 0.36 +1.0
140,919 - 14524 mRNA_6156 0.46 -0.8
141,366 - -0.9
141,524 + -0.6
141,950 + -0.8
142,087 + +1.1
142,107 - -1.2
142,116 - -0.5
142,155 + -0.1
142,158 - +0.0
142,261 - -0.4
142,379 + +1.4
142,411 + -0.3
142,415 + +0.2

Or see this region's nucleotide sequence