Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6168

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14535 and 14536 are separated by 312 nucleotides14536 and 14537 are separated by 126 nucleotides mRNA_6167: 14535 - K11672 ACTR5, ARP5, INO80M actin-related protein 5, at 157,768 to 160,667 14535 mRNA_6168: 14536 - SUPERFAMILY--SSF52047, at 160,980 to 164,129 14536 mRNA_6169: 14537 - K20304 TRAPPC6, TRS33 trafficking protein particle complex subunit 6, at 164,256 to 165,475 14537

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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160,437 + +1.6
160,995 - -0.2
161,809 - 14536 mRNA_6168 0.26 -1.9
161,854 - 14536 mRNA_6168 0.28 -1.9
162,291 - 14536 mRNA_6168 0.42 +0.6
162,435 - 14536 mRNA_6168 0.46 -0.5
162,584 - 14536 mRNA_6168 0.51 +0.7
162,621 - 14536 mRNA_6168 0.52 +0.9
162,753 + 14536 mRNA_6168 0.56 +0.9
163,017 + 14536 mRNA_6168 0.65 -0.5
163,324 + 14536 mRNA_6168 0.74 -1.5
163,593 - 14536 mRNA_6168 0.83 -0.1
163,620 - 14536 mRNA_6168 0.84 -1.0
163,622 + 14536 mRNA_6168 0.84 -0.4
163,742 - 14536 mRNA_6168 0.88 -0.9
163,888 + -0.6
163,907 - -0.4
164,013 + -0.6
164,030 - -1.2
164,176 + -1.6
164,182 - -0.2
164,193 + -0.1
164,213 + +1.5

Or see this region's nucleotide sequence