Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6192

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14559 and 14560 are separated by 687 nucleotides14560 and 14561 are separated by 109 nucleotides mRNA_6191: 14559 - K01485 codA cytosine deaminase, at 218,019 to 218,832 14559 mRNA_6192: 14560 - Hypothetical Protein, at 219,520 to 220,950 14560 mRNA_6193: 14561 - Hypothetical Protein, at 221,060 to 222,668 14561

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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218,752 + -1.2
219,011 - +0.2
219,135 + +1.0
219,142 - +1.1
219,151 + +0.7
219,156 + +0.6
219,157 - +0.0
219,161 - +0.2
219,161 - -0.4
219,175 - -2.3
219,179 + -2.2
219,188 + -1.6
219,210 - -0.0
219,216 + -0.1
219,228 + -2.2
219,229 + -0.3
219,232 + -0.8
219,288 + -0.1
219,290 + +1.1
219,320 - -2.0
219,328 + +1.0
219,486 + +0.4
219,617 - +2.1
219,654 - -0.4
219,664 + 14560 mRNA_6192 0.10 -1.0
219,775 + 14560 mRNA_6192 0.18 -0.7
219,795 - 14560 mRNA_6192 0.19 +0.2
220,359 - 14560 mRNA_6192 0.59 -1.8
220,407 + 14560 mRNA_6192 0.62 +1.6
220,931 - -0.6
220,942 + +0.3
221,000 + -0.4
221,130 - -1.9
221,235 - 14561 mRNA_6193 0.11 +0.3
221,246 + 14561 mRNA_6193 0.12 +2.4
221,496 - 14561 mRNA_6193 0.27 -1.3
221,814 + 14561 mRNA_6193 0.47 +0.6

Or see this region's nucleotide sequence