Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6208

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14575 and 14576 are separated by 683 nucleotides mRNA_6207: 14575 - KOG2711 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase, at 248,249 to 248,882 14575 mRNA_6208: 14576 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 249,566 to 251,082 14576

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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248,814 + 14575 mRNA_6207 0.89 -1.0
249,011 - -0.6
249,075 - -0.9
249,078 - -0.3
249,082 + +2.0
249,083 + +0.1
249,195 - +0.8
249,198 + -0.8
249,211 - -0.2
249,227 - +0.7
249,245 - -1.5
249,367 - -0.2
249,368 + -0.1
249,404 - -2.1
249,428 + -0.7
249,506 + +0.4
249,515 + -0.1
249,796 + 14576 mRNA_6208 0.15 +0.3
250,082 + 14576 mRNA_6208 0.34 +1.5
250,219 + 14576 mRNA_6208 0.43 +0.3
250,515 + 14576 mRNA_6208 0.63 -0.4
250,831 + 14576 mRNA_6208 0.83 +1.3
250,832 - 14576 mRNA_6208 0.83 +0.4
251,078 - -2.0
251,160 + +0.0
251,258 - +1.5
251,259 + +0.1
251,285 + +0.1
251,408 - -0.1
251,413 + +0.1
251,414 - +0.2
251,414 - +0.2
251,414 - -1.0
251,415 + -0.7
251,430 + +1.2
251,432 + +0.1
251,441 + +0.1
251,443 - -0.4
251,589 - -0.1
251,605 + +0.9
251,630 + +0.7
251,634 + -0.2
251,712 + -1.6
251,734 - +0.9
251,888 + -0.3
251,913 + -0.9

Or see this region's nucleotide sequence